Man pages for PCpheno
Phenotypes and cellular organizational units
| buildFDMat | Build fitness defect contingency matrix |
| categoryToEntrezBuilder | Return a list mapping multi-protein complexes IDs to YEAST... |
| CoHyperGParams-class | Class "CoHyperGParams" |
| CoHyperGResult-class | Class "CoHyperGResult" |
| complexStatus | Complex Status |
| densityEstimate | Observed versus Expected Ratios |
| deResult-class | A class for representing the result of a densityEstimate... |
| Dudley | List of fitness defect score generated from Dudley et al 2005 |
| getDescr | Get formatted annotation data |
| getFDgene | Get fitness defect genes |
| Giaever | List of fitness defect score generated from Giaever et al... |
| graphTheory | Graph theory to test associations between two or more... |
| gtResult-class | A class for representing the result of a graphTheory test. |
| HI | Data from Deutshbauer et al. (2005) |
| Kastenmayer | Data from Kastenmayer et al. 2006 |
| KEGG2SCISI | Mapping between KEGG and ScISI |
| Lesage | Data from Lesage et al. 2005 |
| Osterberg | Data from Osterberg at al. 2006 |
| overlap | Count the number of proteins shared by protein complexes |
| PCpheno.package | Linkage between Protein Complexes, Pathways, and Phenotypes |
| plot | Graphical method to represent the result of the density or... |
| ppiInteraction | Test the association between AP-MS data and phenotype |
| reduceM | Resize a matrix |
| SGDphenoL | Saccharomyces Genome Database list of phenotypic data |
| testResult-class | A virtual class for representing the result of a test. |
| truncName | Truncate character strings |
| YEASTOHNOLOG | List of ohnolog gene pairs from Byrne, K.P and Wolfe, K.H... |
