API for PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data

Global functions
.GR	Source code
.Hill	Source code
.PharmacoSet	Man page
.calculateFromRaw	Source code
.computeAUCUnderFittedCurve	Source code
.computeCumSumDelta	Source code
.computeDelta	Source code
.createPSetEntry	Source code
.drugSensitivitySigPharmacoSet	Source code
.getCommonConcentrationRange	Source code
.meshEval	Source code
.optimizeRegression	Source code
.rebuildInfo	Source code
.rebuildN	Source code
.rebuildProfiles	Source code
.rebuildRaw	Source code
.residual	Source code
.showSigAnnotPharmacoSig	Source code
.subsetToPharmacoSet	Source code
.summarizeMolecularNumbers	Source code
.summarizePerturbationNumbers	Source code
.summarizeSensProfiles	Man page Source code
.summarizeSensitivityNumbers	Source code
CCLEsmall	Man page
CMAPsmall	Man page
GDSCsmall	Man page
GRRegression	Source code
HDAC_genes	Man page
PharmacoSet	Man page Source code
PharmacoSet-class	Man page
PharmacoSig	Man page Source code
[,PharmacoSet,ANY,ANY,ANY-method	Man page
amcc	Man page Source code
availablePSets	Man page Source code
callingWaterfall	Man page Source code
cellInfo,PharmacoSet-method	Man page
cellInfo<-,PharmacoSet,data.frame-method	Man page
cellNames,PharmacoSet-method	Man page
cellNames<-,PharmacoSet,character-method	Man page
checkPsetStructure	Man page Source code
computeABC	Man page Source code
computeAUC	Man page
computeAUC_old	Source code
computeAmax	Man page Source code
computeDSS	Source code
computeIC50	Man page Source code
computeICn	Man page Source code
computeSlope	Man page Source code
connectivityScore	Man page Source code
cosinePerm	Man page Source code
dateCreated,PharmacoSet-method	Man page
dim,PharmacoSet-method	Man page
downloadPSet	Man page Source code
downloadPertSig	Man page Source code
drugDoseResponseCurve	Man page Source code
drugInfo	Man page
drugInfo,PharmacoSet-method	Man page
drugInfo<-	Man page
drugInfo<-,PharmacoSet,data.frame-method	Man page
drugNames	Man page
drugNames,PharmacoSet-method	Man page
drugNames<-	Man page
drugNames<-,PharmacoSet,character-method	Man page
drugPerturbationSig	Man page Source code
drugSensitivitySig,PharmacoSet-method	Man page
fNames,PharmacoSet,character-method	Man page
fNames<-,PharmacoSet,character,character-method	Man page
featureInfo,PharmacoSet-method	Man page
featureInfo<-,PharmacoSet,character,DataFrame-method	Man page
filterNoisyCurves	Man page Source code
geneDrugPerturbation	Source code
geneDrugSensitivity	Man page Source code
getRawSensitivityMatrix	Source code
gwc	Man page
intersectPSet	Man page Source code
logLogisticRegression	Man page Source code
mDataNames,PharmacoSet-method	Man page
mcc	Man page Source code
molecularProfiles,PharmacoSet-method	Man page
molecularProfiles<-,PharmacoSet,character,character,matrix-metho	Man page
molecularProfiles<-,PharmacoSet,character,missing,matrix-method	Man page
molecularProfilesSlot,PharmacoSet-method	Man page
molecularProfilesSlot<-,PharmacoSet,list-method	Man page
name,PharmacoSet-method	Man page
name<-,PharmacoSet,character-method	Man page
pertNumber,PharmacoSet-method	Man page
pertNumber<-,PharmacoSet,array-method	Man page
phenoInfo,PharmacoSet-method	Man page
phenoInfo<-,PharmacoSet,character,DataFrame-method	Man page
plot.PharmacoSig	Man page Source code
sanitizeInput	Source code
sensNumber,PharmacoSet-method	Man page
sensNumber<-,PharmacoSet,matrix-method	Man page
sensitivityInfo,PharmacoSet-method	Man page
sensitivityInfo<-,PharmacoSet,data.frame-method	Man page
sensitivityMeasures,PharmacoSet-method	Man page
sensitivityMeasures<-,PharmacoSet,character-method	Man page
sensitivityProfiles,PharmacoSet-method	Man page
sensitivityProfiles<-,PharmacoSet,data.frame-method	Man page
sensitivityProfiles<-,PharmacoSet,matrix-method	Man page
sensitivityRaw,PharmacoSet-method	Man page
sensitivityRaw<-,PharmacoSet,array-method	Man page
sensitivitySlot,PharmacoSet-method	Man page
sensitivitySlot<-,PharmacoSet,list-method	Man page
sensitivitySlotToLongTable,PharmacoSet-method	Man page
show,PharmacoSet-method	Man page
show,PharmacoSig-method	Man page
showSigAnnot,PharmacoSig-method	Man page
subsetTo,PharmacoSet-method	Man page
summarizeMolecularProfiles,PharmacoSet-method	Man page
summarizeSensitivityProfiles,PharmacoSet-method	Man page
updateCellId	Source code
updateDrugId	Source code
updateMaxConc	Source code