boxplotSexGenotypeBatchAdjusted: Method "boxplotSexGenotypeBatchAdjusted"

In PhenStat: Statistical analysis of phenotypic data

Description

Graph function for the phenotypic dataset. Creates a box plot split by sex and genotype after accounting for batch.

Usage

    boxplotSexGenotypeBatchAdjusted(
		phenList,
		depVariable=NULL,
		graphingName=NULL,
		outputMessages=TRUE)

Arguments

phenList	instance of the PhenList class; mandatory argument
depVariable	a character string defining the dependent variable of interest; mandatory argument
graphingName	a character string defining the name to be used on the graph for the dependent variable; mandatory argument
outputMessages	flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE

Value

Empty.

Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenList

Examples

    file <- system.file("extdata", "test1.csv", package="PhenStat")
    test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Sparc/Sparc")
    # box plot for dataset with two sexes: males and females
    PhenStat:::boxplotSexGenotypeBatchAdjusted(test,
            depVariable="Bone.Mineral.Content",
            graphingName="BMC" )

PhenStat documentation built on Nov. 8, 2020, 8:13 p.m.