categoricalBarplot: Method "categoricalBarplot"
In PhenStat: Statistical analysis of phenotypic data

Description Usage Arguments Value Author(s) References See Also Examples

Graph function for the Fisher Exact Test framework's results. Creates stacked bar plot(s) to compare proportions seen in a categorical variable between different genotypes. Graphs are created for all data and also for each sex individually.

1 2	categoricalBarplot(phenTestResult, outputMessages=TRUE)

`phenTestResult`	instance of the `PhenTestResult` class that comes from the function `testDataset`; mandatory argument
`outputMessages`	flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE

Empty.

Natalja Kurbatova, Natasha Karp, Jeremy Mason

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

PhenList

    file <- system.file("extdata", "test_categorical.csv", package="PhenStat")
    test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Aff3/Aff3")
    result <- PhenStat:::testDataset(test,
            depVariable="Thoracic.Processes",
            method="FE")
    PhenStat:::categoricalBarplot(result)