Files in PhenStat
Statistical analysis of phenotypic data
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
R/plotPhenTestResult.R
R/LogisticFramework.R
R/PhenTestResult.R
R/plotPhenList.R
R/graphsResults.R
R/GenerateReport.R
R/classes.R
R/JSONOutput.R
R/transformation.R
R/TFFramework.R
R/summaryOutput.R
R/SideFunctions.R
R/FETFramework.R
R/WhatIsNew.R
R/graphsDataset.R
R/PhenList.R
R/classification.R
R/MMFramework.R
R/testDataset.R
R/RRFramework.R
R/vectorOutput.R
R/PhenSmoothWin.R
R/diagnostictest.R
vignettes/PhenStat.Rnw
man/setGenotype.Rd
man/summaryOutput.Rd
man/finalLRModel.Rd
man/getStat.Rd
man/classificationTag.Rd
man/htestPhenStat-class.Rd
man/plot.PhenList.Rd
man/scatterplotGenotypeWeightResult.Rd
man/scatterplotSexGenotypeBatchResult.Rd
man/setSex.Rd
man/analysedDatasetPhenList.Rd
man/boxplotSexGenotypeBatch.Rd
man/vectorOutput.Rd
man/getColumn.Rd
man/plot.PhenTestResult.Rd
man/setMissingValue.Rd
man/analysisResults.Rd
man/testFinalLRModel.Rd
man/batchIn.Rd
man/modelFormulaLR.Rd
man/testFinalModel.Rd
man/getColumnBatchAdjusted.Rd
man/scatterplotSexGenotypeBatch.Rd
man/qqplotRandomEffects.Rd
man/testGenotype.Rd
man/printTabStyle.Rd
man/qqplotGenotype.Rd
man/formulaDeterminingLambda.Rd
man/modelFormula.Rd
man/methodText.Rd
man/getCountMatrices.Rd
man/getMatrix.Rd
man/matrixCount.Rd
man/getColumnWeightBatchAdjusted.Rd
man/startModel.Rd
man/PhenTestResult-class.Rd
man/parserOutputSummary.Rd
man/PhenList.Rd
man/TFDataset.Rd
man/pvalue.Rd
man/analysedDataset.Rd
man/subsetText.Rd
man/PhenList-class.Rd
man/startLRModel.Rd
man/getColumnView.Rd
man/method.Rd
man/analysedSubset.Rd
man/getVariables.Rd
man/transformation.Rd
man/transformationText.Rd
man/boxplotSexGenotype.Rd
man/parserOutputTFSummary.Rd
man/setBatch.Rd
man/scatterplotGenotypeWeight.Rd
man/performTransformation.Rd
man/refGenotype.Rd
man/PhenStatReport.Rd
man/dataset.Rd
man/determiningLambda.Rd
man/FisherExactTest.Rd
man/plotResidualPredicted.Rd
man/LRDataset.Rd
man/performReverseTransformation.Rd
man/getDataset.Rd
man/boxplotSexGenotypeBatchAdjusted.Rd
man/hemiGenotype.Rd
man/getGenotypeEffect.Rd
man/noSexes.Rd
man/transformationJSON.Rd
man/summaryPhenListResult.Rd
man/RRTest.Rd
man/finalModel.Rd
man/setWeight.Rd
man/vectorOutputMatrices.Rd
man/columnChecks.Rd
man/startTFModel.Rd
man/testDataset.Rd
man/multipleBatches.Rd
man/parserOutputSummaryLR.Rd
man/LargeDataObject-class.Rd
man/finalTFModel.Rd
man/parameters.Rd
man/htest-class.Rd
man/printLROutput.Rd
man/checkDataset.Rd
man/comparison.Rd
man/getPercentageMatrix.Rd
man/PhenTestResult.Rd
man/weightIn.Rd
man/categoricalBarplot.Rd
man/columnLevels.Rd
man/boxplotSexGenotypeWeightBatchAdjusted.Rd
man/getVariable.Rd
man/recommendMethod.Rd
man/qqplotRotatedResiduals.Rd
man/generateGraphs.Rd
man/JSONOutput.Rd
man/dim.Rd
man/boxplotSexGenotypeResult.Rd
man/boxplotResidualBatch.Rd
tests/runTests.R
inst/NEWS.Rd
inst/doc/PhenStat.R
inst/doc/PhenStat.pdf
inst/doc/PhenStat.Rnw
inst/report/report.Rnw
inst/report/GeCoSy.Rdata
inst/report/maina.bib
inst/extdata/permutationTest.csv
inst/extdata/test2.csv
inst/extdata/test1.csv
inst/extdata/test3.csv
inst/extdata/test1_1sex.csv
inst/extdata/test_categorical.csv
inst/extdata/test4.csv
inst/extdata/test7_TFE.csv
inst/extdata/testLR.csv
inst/extdata/test6_RR.csv
inst/unitTests/unitTests.R
