testFinalLRModel: Method "testFinalLRModel"
In PhenStat: Statistical analysis of phenotypic data

Description Usage Arguments Value Author(s) References See Also Examples

Performs diagnostic tests for Logistic Regression model quality of fit. There are no arguments checks assuming that function is called internally from the "finalLRModel" function. Otherwise should be used with precaution.

1	testFinalLRModel(phenTestResult)

phenTestResult

instance of the PhenTestResult class that comes from the function testDataset ; mandatory argument

Returns a vector with model fitting results

Natalja Kurbatova, Natasha Karp, Jeremy Mason

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

PhenTestResult

    file <- system.file("extdata", "testLR.csv", package="PhenStat")
    testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Mock")
    testLR2 <- PhenStat:::LRDataset(testLR,"V2")
    resultLR <- PhenStat:::testDataset(testLR2,
            depVariable="V2",
            method="LR")
    PhenStat:::testFinalLRModel(resultLR)