generateGraphs: Method "generateGraphs"

In PhenStat: Statistical analysis of phenotypic data

Description

Function generates graphs for the Mixed Model and Time as Fixed Effect frameworks' results and stores generated graphs in the defined directory.

Usage

    generateGraphs(phenTestResult, dir,
            graphingName=NULL, type="Xlib")

Arguments

phenTestResult	instance of the PhenTestResult class that comes from the function testDataset; mandatory argument
dir	directory where to store generated graphs; mandatory argument
graphingName	a character string defining the name to be used on the graph for the dependent variable; defaults to NULL then the depVariable name will be plotted
type	character string, one of "Xlib" or "quartz" (some OS X builds) or "cairo", or "window", or cairo-png"; mandatory argument

Value

Empty.

Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenTestResult

PhenStat documentation built on Nov. 8, 2020, 8:13 p.m.