columnChecks: Method "columnChecks"
In PhenStat: Statistical analysis of phenotypic data

Description Usage Arguments Value Author(s) References

Checks the particular column of the dataset for eligibility. Returns: presence of column, all data are numeric, number of levels that passed check (number of data points for each genotype/sex combination is at least equals to threshold).

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    columnChecks(dataset, 
				columnName, 
				dataPointsThreshold=4)

`dataset`	data frame created from file or from another source; mandatory argument
`columnName`	name of the column to check; mandatory argument
`dataPointsThreshold`	number of data points for each genotype/sex combination; default value is set to 4

Boolean vector of length 3: presence of column, all data are numeric, number of levels that passed check (number of data points for each genotype/sex combination is at least equals to threshold).

Natalja Kurbatova, Natasha Karp, Jeremy Mason

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

PhenStat documentation built on Nov. 8, 2020, 8:13 p.m.