Description Value Explore htestPhenStat object Slots Methods Author(s) See Also Examples
Extension of htest class for the PhenStat needs
Empty.
A list with "htest" components in modelOutput slot and the additional PhenStat specific slots:
1. modelOutput: htest object with Fisher Exact test (fisher.test) output
2. analysedSubset: the subset analysed with possible values "all", "males", "females"
3. comparison: for the RR method with possible values "High vs Normal/Low", "Low vs Normal/High"
4. ES: effect size value
5. matrixCount: matrix of counts used for the test
modelOutput
:Object of class "htest"
~~
analysedSubset
:Object of class "character"
~~
comparison
:Object of class "character"
~~
ES
:Object of class "numeric"
~~
matrixCount
:Object of class "matrix"
~~
signature(obj = "htestPhenStat")
: ...
signature(obj = "htestPhenStat")
: ...
signature(obj = "htestPhenStat")
: ...
signature(object = "htestPhenStat")
: ...
signature(object = "htestPhenStat")
: ...
signature(object = "htestPhenStat")
: ...
Natalja Kurbatova
1 2 3 4 5 6 7 8 9 | file <- system.file("extdata", "test_categorical.csv", package="PhenStat")
test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
testGenotype="Aff3/Aff3")
# "FisherExactTest" function is called from "testDataset" function.
result <- PhenStat:::testDataset(test,depVariable="Thoracic.Processes",method="FE")
# Fisher Exact Test results can be printed out using function "summaryOutput"
val <- PhenStat:::analysisResults(result)[[1]]
print(val)
class(val)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.