plotResidualPredicted: Method "plotResidualPredicted"
In PhenStat: Statistical analysis of phenotypic data

Description Usage Arguments Value Author(s) References See Also Examples

Graph function for the Mixed Model framework's results. Creates predicted versus residual values plots split by genotype.

1	plotResidualPredicted(phenTestResult,outputMessages=TRUE)

`phenTestResult`	instance of the `PhenTestResult` class that comes from the function `testDataset`; mandatory argument
`outputMessages`	flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE

Empty.

Natalja Kurbatova, Natasha Karp, Jeremy Mason

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

PhenList and PhenTestResult

    file <- system.file("extdata", "test1.csv", package="PhenStat")
    test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Sparc/Sparc")
    result <- PhenStat:::testDataset(test,
            depVariable="Lean.Mass")
    PhenStat:::plotResidualPredicted(result)