parserOutputTFSummary: Method "parserOutputTFSummary"
In PhenStat: Statistical analysis of phenotypic data

Description Usage Arguments Value Author(s) References See Also Examples

Parsers model output summary from TF framework and returns it in readable named vector format

1	parserOutputTFSummary(linearRegressionOutput)

linearRegressionOutput

linear regression output that comes from the TF method; mandatory argument

Returns a named vector with model output summary results

Natalja Kurbatova, Natasha Karp, Jeremy Mason

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

PhenTestResult

    file <- system.file("extdata", "test6_RR.csv", package="PhenStat")
    test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Oxr1/Oxr1")
    result <- PhenStat:::testDataset(test,
            depVariable="Ca",
            method="TF",
            dataPointsThreshold=2)
    linearRegressionOutput <- PhenStat:::analysisResults(result)
    PhenStat:::parserOutputTFSummary(linearRegressionOutput)