printLROutput: Method "printLROutput"

In PhenStat: Statistical analysis of phenotypic data

Description

Prints out for linear regression output

Usage

    
    printLROutput(phenTestResult,phenotypeThreshold=0.01)

Arguments

phenTestResult	instance of the PhenTestResult class that comes from the function testDataset; mandatory argument
effectValues	a vector with genotype effect and standard error for the linear regression; mandatory argument
phenotypeThreshold	a numerical value defining the threshold to use in classificationTag; default value 0.01

Value

Prints out the common part of linear regression output.

Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenTestResult

Examples

    file <- system.file("extdata", "testLR.csv", package="PhenStat")
    testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
            testGenotype="Mock")
    testLR2 <- PhenStat:::LRDataset(testLR,"V2")
    resultLR <- PhenStat:::testDataset(testLR2,
            depVariable="V2",
            method="LR")
    PhenStat:::printLROutput(resultLR)

PhenStat documentation built on Nov. 8, 2020, 8:13 p.m.