PureCN-defunct: Defunct functions in package 'PureCN'
In PureCN: Copy number calling and SNV classification using targeted short read sequencing
Description
These functions are defunct and no longer available.
Details
The following functions are defunct; use
the replacement indicated below:
autoCurateResults: no replacement
calculateGCContentByInterval: preprocessIntervals
calculateIntervalWeights: createNormalDatabase
createExonWeightFile: createNormalDatabase
createSNPBlacklist: setMappingBiasVcf
createTargetWeights: createNormalDatabase
filterTargets: filterIntervals
findBestNormal: calculateTangentNormal
getDiploid: no replacement
plotBestNormal: no replacement
readCoverageGatk: readCoverageFile
PureCN documentation built on Nov. 8, 2020, 5:37 p.m.
R Package Documentation
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Description
These functions are defunct and no longer available.
Details
The following functions are defunct; use the replacement indicated below:
autoCurateResults: no replacement
calculateGCContentByInterval:
preprocessIntervalscalculateIntervalWeights:
createNormalDatabasecreateExonWeightFile:
createNormalDatabasecreateSNPBlacklist:
setMappingBiasVcfcreateTargetWeights:
createNormalDatabasefilterTargets:
filterIntervalsfindBestNormal:
calculateTangentNormalgetDiploid: no replacement
plotBestNormal: no replacement
readCoverageGatk:
readCoverageFile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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