centromeres: A list of data.frames containing centromere positions.

In PureCN: Copy number calling and SNV classification using targeted short read sequencing

Description

A list of data.frames containing centromere positions for hg18, hg19 and hg38. Downloaded from the UCSC genome browser.

Usage

data(centromeres)

Value

A list with three data frames, "hg18", "hg19", and "hg38". Each containes three columns

chrom

a factor with levels chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrX chrY

chromStart

a numeric vector

chromEnd

a numeric vector

References

The script downloadCentromeres.R in the extdata directory was used to generate the data.frames.

Examples

data(centromeres)

PureCN documentation built on Nov. 8, 2020, 5:37 p.m.