respFunJacMat: Calculates the Jacobian of the parametric response functions

In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description

Calculates the Jacobian of the parametric response functions

Usage

respFunJacMat(
  betas,
  X,
  reg,
  thetaMat,
  muMarg,
  psi,
  v,
  p,
  IDmat,
  IndVec,
  allowMissingness,
  naId
)

Arguments

betas	a vector of length (deg+1)*(p+1) with regression parameters with deg the degree of the response function and the lagrangian multipliers
X	the nxp data matrix
reg	a vector of regressors with the dimension n-by-v
thetaMat	The n-by-p matrix with dispersion parameters
muMarg	offset matrix of size nxp
psi	a scalar, the importance parameter
v	an integer, one plus the degree of the response function
p	an integer, the number of taxa
IDmat	an logical matrix with indices of non-zero elements
IndVec	a vector with indices with non-zero elements
allowMissingness	A boolean, are missing values present
naId	The numeric index of the missing values in X

Value

The jacobian, a square matrix of dimension (deg+1)*(p+1)

RCM documentation built on Nov. 8, 2020, 5:22 p.m.