Files in RPA

RPA: Robust Probabilistic Averaging for probe-level analysis

README.md R/update.hyperparameters.R R/toydata.R R/summarize.rpa.hitchip.R R/calculate.rpa.hitchip.R R/frpa.R R/show-methods.R R/n.phylotypes.per.oligo.R R/AllGenerics.R R/RPA-package.R R/internals.R R/summarize.batches.R R/RPA.tau2.update.R R/d.update.fast.R R/probe.performance.R R/summarize_probedata_hitchip.R R/rpa.plot.R R/updating.hyperparameters.R R/summarize.sum.hitchip.R R/RPA.dcost.R R/get.probeset.hitchip.R R/initialize.priors.R R/plot-methods.R R/online.quantile.R R/AllClasses.R R/retrieve.probesets.hitchip.R R/rpa.summarize.R R/get.probe.matrix.R R/rpa.online.R R/estimate.affinities.R R/rpa.R R/summarize.batch.R R/firstlib.R R/RPA.iteration.R R/RPA.preprocess.R R/rpa.complete.R R/estimate.hyperparameters.R R/rpa.fit.R R/levelmap.R vignettes/RPA.Rmd vignettes/RPA.md man/rpa.online.Rd man/collect.hyperparameters.Rd man/calculate.rpa.Rd man/summarize.batches.Rd man/rpa.summarize.Rd man/estimate.affinities.Rd man/summarize_probedata.Rd man/online.quantile.Rd man/get.probe.parameters.Rd man/levelmap.Rd man/probe.performance.Rd man/summarize.batch.Rd man/retrieve.probesets.Rd man/d.update.fast.Rd man/rpa.plot.Rd man/probeplot.Rd man/n.phylotypes.per.oligo.Rd man/get.batches.Rd man/hyperparameter.update.Rd man/probe.parameters.tolist.Rd man/probetable.Rd man/RPA-package.Rd man/summarize.sum.Rd man/get.probe.matrix.Rd man/rpa.complete.Rd man/frpa.Rd man/updating.hyperparameters.Rd man/estimate.hyperparameters.Rd man/rpa.fit.Rd man/summarize.rpa.Rd man/rpaplot.Rd man/rpa.Rd man/RPA.preprocess.Rd man/get.probeset.Rd man/RPA.iteration.Rd man/sample.probeset.Rd tests/rpa.R inst/doc/RPA.Rmd