getFASTAFromKEGG: Retrieve Protein Sequence in FASTA Format from the KEGG...
In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery

Description Usage Arguments Details Value Author(s) See Also Examples

Retrieve Protein Sequence in FASTA Format from the KEGG Database

1	getFASTAFromKEGG(id, parallel = 5)

`id`	A character vector, as the protein ID.
`parallel`	An integer, the parallel parameter, indicates how many process the user would like to use for retrieving the data (using RCurl), default is `5`. For regular cases, we recommend a number less than `20`.

This function retrieves protein sequences in FASTA format from the KEGG database.

A list, each component contains one of the protein sequences in FASTA format.

Nan Xiao <https://nanx.me>

See getSeqFromKEGG for retrieving protein represented by amino acid sequence from the KEGG database. See readFASTA for reading FASTA format files.

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id = c('hsa:10161', 'hsa:10162')

getFASTAFromKEGG(id)

OpenJDK 64-Bit Server VM warning: Can't detect initial thread stack location - find_vma failed
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Warning message:
system call failed: Cannot allocate memory