getPDBFromRCSBPDB: Retrieve Protein Sequence in PDB Format from RCSB PDB

In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery

Description

Retrieve Protein Sequence in PDB Format from RCSB PDB

Usage

getPDBFromRCSBPDB(id, parallel = 5)

Arguments

id	A character vector, as the protein ID.
parallel	An integer, the parallel parameter, indicates how many process the user would like to use for retrieving the data (using RCurl), default is 5. For regular cases, we recommend a number less than 20.

Details

This function retrieves protein sequences in PDB format from RCSB PDB.

Value

A list, each component contains one of the protein sequences in PDB format.

Author(s)

Nan Xiao <https://nanx.me>

See Also

See getSeqFromRCSBPDB for retrieving protein represented by amino acid sequence from the RCSB PDB database.

Examples

id = c('4HHB', '4FF9')

getPDBFromRCSBPDB(id)

Rcpi documentation built on Nov. 8, 2020, 8:23 p.m.