getSeqFromUniProt: Retrieve Protein Sequence from the UniProt Database
In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Retrieve Protein Sequence from the UniProt Database
Usage
1
getSeqFromUniProt(id, parallel = 5)
Arguments
id
A character vector, as the protein ID.
parallel
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is 5.
For regular cases, we recommend a number less than 20.
Details
This function retrieves protein represented by amino acid sequence
from the UniProt database.
Value
A list, each component contains one of the protein
represented by amino acid sequence(s).
Author(s)
Nan Xiao <https://nanx.me>
References
UniProt. https://www.uniprot.org/
UniProt REST API Documentation. https://www.uniprot.org/faq/28
See Also
See getFASTAFromUniProt for retrieving protein
sequences in FASTA format from the UniProt database.
Examples
1
2
3
id = c('P00750', 'P00751', 'P00752')
getSeqFromUniProt(id)
Rcpi documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Retrieve Protein Sequence from the UniProt Database
Usage
1 | getSeqFromUniProt(id, parallel = 5)
|
Arguments
id |
A character vector, as the protein ID. |
parallel |
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is |
Details
This function retrieves protein represented by amino acid sequence from the UniProt database.
Value
A list, each component contains one of the protein represented by amino acid sequence(s).
Author(s)
Nan Xiao <https://nanx.me>
References
UniProt. https://www.uniprot.org/
UniProt REST API Documentation. https://www.uniprot.org/faq/28
See Also
See getFASTAFromUniProt for retrieving protein
sequences in FASTA format from the UniProt database.
Examples
1 2 3 | id = c('P00750', 'P00751', 'P00752')
getSeqFromUniProt(id)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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