RnBeadClustering-class: RnBeadClustering Class

Description Slots Methods and Functions Author(s)

Description

Storage class for the results of a clustering algorithm applied on an RnBSet dataset.

Slots

dissimilarity

Dissimilarity metric used in the form of a one-element character vector.

dimensionality

Dimensionality of the clustered points in the form of a one-element integer vector.

algorithm

Clustering algorithm (and optionally, type) as a character vector of length 1 or 2.

result

Resulting object after applying the clustering algorithm on a dataset.

assignments

Cluster assignments for the samples in the dataset as a matrix. Row names in this matrix are sample identifiers, and each column is dedicated to partitioning into k clusters for a fixed k.

silhouettes

numeric vector of mean silhouette values for each tested value of k.

Methods and Functions

samples

Gets the identifiers of all samples used in the clustering.

Author(s)

Yassen Assenov


RnBeads documentation built on March 3, 2021, 2 a.m.