RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale. It extends previous approaches for such analysis by high throughput capabilities, as well as presenting results in a comprehensive, highly interpretable fashion.
The complete analysis can be performed by calling the function
Yassen Assenov*, Fabian Mueller*, Pavlo Lutsik*, Joern Walter, Thomas Lengauer and Christoph Bock (2014) Compehensive Analysis of DNA Methylation Data with RnBeads, Nature Methods, 11(11):1138-1140.
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