getNumNaMeth-methods: getNumNaMeth-methods
In RnBeads: RnBeads
Description
Usage
Arguments
Value
Description
for each site/region, the getNumNaMeth retrieves the number of NA values accross all samples.
Does this efficiently by breaking down the methylation matrix into submatrices
Usage
1
2
## S4 method for signature 'RnBSet'
getNumNaMeth(object, type = "sites", chunkSize = 1e+05, mask = NULL)
Arguments
object
object inheriting from RnBSet
type
"sites" or region type
chunkSize
size of each submatrix (performance tuning parameter)
mask
logical matrix. its entries will also be considered NAs in counting
Value
vector containing the number of NAs per site/region
RnBeads documentation built on March 3, 2021, 2 a.m.
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Description Usage Arguments Value
Description
for each site/region, the getNumNaMeth retrieves the number of NA values accross all samples. Does this efficiently by breaking down the methylation matrix into submatrices
Usage
1 2 | ## S4 method for signature 'RnBSet'
getNumNaMeth(object, type = "sites", chunkSize = 1e+05, mask = NULL)
|
Arguments
object |
object inheriting from |
type |
"sites" or region type |
chunkSize |
size of each submatrix (performance tuning parameter) |
mask |
logical matrix. its entries will also be considered NAs in counting |
Value
vector containing the number of NAs per site/region
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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