initialize-RnBDiffMeth-method: initialize.RnBDiffMeth

In RnBeads: RnBeads

Description

Initialize an RnBDiffMeth object

Usage

## S4 method for signature 'RnBDiffMeth'
initialize(
  .Object,
  site.test.method = rnb.getOption("differential.site.test.method"),
  variability.method = rnb.getOption("differential.variability.method"),
  covg.thres = rnb.getOption("filtering.coverage.threshold"),
  disk.dump = FALSE,
  disk.path = NULL
)

Arguments

.Object	New instance of RnBDiffMeth.
site.test.method	method which was applied to obtain the site-level p-values.
variability.method	method to be used to calculate differentially variable sites. Has to be one of: ‘diffVar’ or ‘iEVORA’.
covg.thres	coverage threshold. Important for certain columns of the differential methylation tables. See computeDiffMeth.bin.site and computeDiffMeth.bin.region for details.
disk.dump	Flag indicating whether the tables should be stored on disk rather than in the main memory
disk.path	Path on the disk for DMTs.Only meaningful if disk.dump is TRUE

Author(s)

Fabian Mueller

RnBeads documentation built on March 3, 2021, 2 a.m.