load.region.subsegment.annotation: load.region.subsegment.annotation

In RnBeads: RnBeads

Description

For the region annotation of a given RnBSet object. Subdivide each region into subsegments by hierarchical clustering on the site distances in a particular region and then splitting the region into subregions consisting of these site clusters. The number of clusters is determined in such way that the mean number of sites per cluster is given by the ns parameter.

Usage

load.region.subsegment.annotation(rnb.set, annotation.dir)

Arguments

rnb.set	The RnBSet object with subsegments specified in the regions
annotation.dir	a directory to load the annotation from. (binary RData format.)

Value

invisible TRUE

Author(s)

Fabian Mueller

RnBeads documentation built on March 3, 2021, 2 a.m.