lump.hg19: LUMP Support
In RnBeads: RnBeads
Description
The sites used by the LUMP algorithm for estimating immune cell content are stored in an object named
lump.hg19. This object should not be loaded or otherwise operated on by users. Please refer to the
documentation of rnb.execute.lump for information on the algorithm and its implementation in
RnBeads.
Format
lump.* is a list of non-empty integer matrices, one per supported platform. Every
matrix contains exactly two columns, denoting chromosome index and chromosome-based index,
respectively. These indices refer to positions within the probe/site annotation table employed by
RnBeads for the corresponding platform.
Author(s)
Yassen Assenov
RnBeads documentation built on March 3, 2021, 2 a.m.
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Description
The sites used by the LUMP algorithm for estimating immune cell content are stored in an object named
lump.hg19. This object should not be loaded or otherwise operated on by users. Please refer to the
documentation of rnb.execute.lump for information on the algorithm and its implementation in
RnBeads.
Format
lump.* is a list of non-empty integer matrices, one per supported platform. Every
matrix contains exactly two columns, denoting chromosome index and chromosome-based index,
respectively. These indices refer to positions within the probe/site annotation table employed by
RnBeads for the corresponding platform.
Author(s)
Yassen Assenov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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