lump.hg19: LUMP Support

Description Format Author(s)


The sites used by the LUMP algorithm for estimating immune cell content are stored in an object named lump.hg19. This object should not be loaded or otherwise operated on by users. Please refer to the documentation of rnb.execute.lump for information on the algorithm and its implementation in RnBeads.


lump.* is a list of non-empty integer matrices, one per supported platform. Every matrix contains exactly two columns, denoting chromosome index and chromosome-based index, respectively. These indices refer to positions within the probe/site annotation table employed by RnBeads for the corresponding platform.


Yassen Assenov

RnBeads documentation built on March 3, 2021, 2 a.m.