rnb.execute.tnt: rnb.execute.tnt

In RnBeads: RnBeads

Description

export RnBSet to various output data formats

Usage

rnb.execute.tnt(
  rnb.set,
  out.dir,
  exp.bed = rnb.getOption("export.to.bed"),
  exp.trackhub = rnb.getOption("export.to.trackhub"),
  region.types = rnb.getOption("export.types"),
  ...
)

Arguments

rnb.set	RnBSet object
out.dir	output directory.
exp.bed	A character vector indicating which data types should be exported to UCSC. Possible values in the vector are bigBed and bigWig. If NULL, UCSC export is disabled
exp.trackhub	file types which should be exported to a trackhub structure.
region.types	a character vector indicating region types to be exported
...	Arguments passed to rnb.export.to.trackhub

Value

a list containing information on the export

Author(s)

Fabian Mueller

Examples

library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.execute.tnt(rnb.set.example,tempdir())

RnBeads documentation built on March 3, 2021, 2 a.m.