rnb.execute.tnt

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Description

export RnBSet to various output data formats

Usage

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rnb.execute.tnt(rnb.set, out.dir, exp.bed = rnb.getOption("export.to.bed"),
  exp.trackhub = rnb.getOption("export.to.trackhub"),
  region.types = rnb.getOption("export.types"), ...)

Arguments

rnb.set

RnBSet object

out.dir

output directory.

exp.bed

A character vector indicating which data types should be exported to UCSC. Possible values in the vector are bigBed and bigWig. If NULL, UCSC export is disabled

exp.trackhub

file types which should be exported to a trackhub structure.

region.types

a character vector indicating region types to be exported

...

Arguments passed to rnb.export.to.trackhub

Value

a list containing information on the export

Author(s)

Fabian Mueller

Examples

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library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.execute.tnt(rnb.set.example,tempdir())

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