rnb.export.to.ewasher: rnb.export.to.ewasher

Description Usage Arguments Value Author(s) Examples

Description

Data exported to a format compatible with the FaST-LMM-EWASher tool for cell-mixture adjustment. see Zou, J., et al., Nature Methods, 2014 for further details on the tool.

Usage

1
rnb.export.to.ewasher(rnb.set, out.dir, reg.type = "sites", ...)

Arguments

rnb.set

Object of class RnBSet

out.dir

output directory. If not existing, it will be created and all exported files will be placed here. If existing, this functions results in an error.

reg.type

region type to be exported

...

passed on to get.comparison.info

Value

a list containing information on the export

Author(s)

Fabian Mueller

Examples

1
2
3
4
library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.export.to.ewasher(rnb.set.example,tempfile(pattern="forEwasher"))


Search within the RnBeads package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.