rnb.plot.sentrix.distributions: rnb.plot.sentrix.distributions

In RnBeads: RnBeads

Description

Creates one or more point-and-whisker plots showing beta value distributions at Sentrix positions.

Usage

rnb.plot.sentrix.distributions(rnb.set, fprefix = "sentrix_whisker", ...)

Arguments

rnb.set	HumanMethylation450K dataset as an object of type RnBeadSet.
fprefix	File name prefix to be used in the generated plots. In order to ensure independence of the operating system, there are strong restrictions on the name of the file. See the documentation of createReportPlot for more information.
...	Other arguments passed to createReportPlot. These can include the named parameters report, width, height, and others.

Details

If no additional parameters are specified, this function creates one PDF and one low-resolution PNG file for every generated plot.

Value

Point-and-whisker plot (an instance of ReportPlot), or a list of such plots - one per slide. If the provided dataset does not contain valid Sentrix ID and position information (or is an empty dataset), this method returns NULL.

Author(s)

Yassen Assenov

See Also

rnb.plot.sentrix.distribution for creating a single plot for a specified slide number

RnBeads documentation built on March 3, 2021, 2 a.m.