API for SC3
Single-Cell Consensus Clustering

Global functions
ED1 Man page Source code
ED2 Man page Source code
ann Man page
calculate_distance Man page Source code
calculate_stability Man page Source code
consensus_matrix Man page Source code
consmx Man page Source code
estkTW Man page Source code
get_auroc Man page Source code
get_biolgy Man page Source code
get_de_genes Man page Source code
get_marker_genes Man page Source code
get_outl_cells Man page Source code
get_processed_dataset Man page Source code
make_col_ann_for_heatmaps Source code
markers_for_heatmap Man page Source code
norm_laplacian Man page Source code
organise_de_genes Man page Source code
organise_marker_genes Man page Source code
prepare_for_svm Man page Source code
reindex_clusters Man page Source code
sc3 Man page Man page
sc3,SingleCellExperiment-method Man page
sc3.SingleCellExperiment Man page Source code
sc3_calc_biology Man page Man page
sc3_calc_biology, Man page
sc3_calc_biology,SingleCellExperiment-method Man page Man page
sc3_calc_biology.SingleCellExperiment Man page Source code
sc3_calc_consens Man page Man page
sc3_calc_consens, Man page
sc3_calc_consens,SingleCellExperiment-method Man page Man page
sc3_calc_consens.SingleCellExperiment Man page Source code
sc3_calc_dists Man page Man page
sc3_calc_dists, Man page
sc3_calc_dists,SingleCellExperiment-method Man page Man page
sc3_calc_dists.SingleCellExperiment Man page Source code
sc3_calc_transfs Man page Man page
sc3_calc_transfs, Man page
sc3_calc_transfs,SingleCellExperiment-method Man page Man page
sc3_calc_transfs.SingleCellExperiment Man page Source code
sc3_estimate_k Man page Man page
sc3_estimate_k,SingleCellExperiment-method Man page Man page
sc3_estimate_k.SingleCellExperiment Man page Source code
sc3_export_results_xls Man page Man page
sc3_export_results_xls,SingleCellExperiment-method Man page
sc3_export_results_xls.SingleCellExperiment Man page Source code
sc3_interactive Man page Man page
sc3_interactive, Man page
sc3_interactive,SingleCellExperiment-method Man page Man page
sc3_interactive.SingleCellExperiment Man page Source code
sc3_kmeans Man page Man page
sc3_kmeans, Man page
sc3_kmeans,SingleCellExperiment-method Man page Man page
sc3_kmeans.SingleCellExperiment Man page Source code
sc3_plot_cluster_stability Man page Man page
sc3_plot_cluster_stability, Man page
sc3_plot_cluster_stability,SingleCellExperiment-method Man page Man page
sc3_plot_cluster_stability.SingleCellExperiment Man page Source code
sc3_plot_consensus Man page Man page
sc3_plot_consensus, Man page
sc3_plot_consensus,SingleCellExperiment-method Man page Man page
sc3_plot_consensus.SingleCellExperiment Man page Source code
sc3_plot_de_genes Man page Man page
sc3_plot_de_genes, Man page
sc3_plot_de_genes,SingleCellExperiment-method Man page Man page
sc3_plot_de_genes.SingleCellExperiment Man page Source code
sc3_plot_expression Man page Man page
sc3_plot_expression, Man page
sc3_plot_expression,SingleCellExperiment-method Man page Man page
sc3_plot_expression.SingleCellExperiment Man page Source code
sc3_plot_markers Man page Man page
sc3_plot_markers, Man page
sc3_plot_markers,SingleCellExperiment-method Man page Man page
sc3_plot_markers.SingleCellExperiment Man page Source code
sc3_plot_silhouette Man page Man page
sc3_plot_silhouette, Man page
sc3_plot_silhouette,SingleCellExperiment-method Man page Man page
sc3_plot_silhouette.SingleCellExperiment Man page Source code
sc3_prepare Man page Man page
sc3_prepare,SingleCellExperiment-method Man page Man page
sc3_prepare.SingleCellExperiment Man page Source code
sc3_run_svm Man page Man page
sc3_run_svm, Man page
sc3_run_svm,SingleCellExperiment-method Man page Man page
sc3_run_svm.SingleCellExperiment Man page Source code
support_vector_machines Man page Source code
tmult Man page Source code
transformation Man page Source code
yan Man page
SC3 documentation built on May 2, 2018, 2:08 a.m.