organise_marker_genes: Get marker genes from an object of 'SingleCellExperiment'...

Description Usage Arguments

View source: R/ShinyFunctions.R

Description

This functions returns all marker gene columns from the phenoData slot of the input object corresponding to the number of clusters k. Additionally, it rearranges genes by the cluster index and order them by the area under the ROC curve value inside of each cluster.

Usage

1
organise_marker_genes(object, k, p_val, auroc)

Arguments

object

an object of SingleCellExperiment class

k

number of cluster

p_val

p-value threshold

auroc

area under the ROC curve threshold


SC3 documentation built on May 2, 2018, 2:08 a.m.