sc3_estimate_k: Estimate the optimal number of cluster 'k' for a scRNA-Seq...

Description Usage Arguments Value

Description

Uses Tracy-Widom theory on random matrices to estimate the optimal number of clusters k. It creates and populates the k_estimation item of the sc3 slot of the metadata(object).

Usage

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sc3_estimate_k.SingleCellExperiment(object)

## S4 method for signature 'SingleCellExperiment'
sc3_estimate_k(object)

Arguments

object

an object of SingleCellExperiment class

Value

an estimated value of k


SC3 documentation built on Jan. 5, 2019, 6:42 p.m.