get_marker_genes: Calculate marker genes
In SC3: Single-Cell Consensus Clustering

Find marker genes in the dataset. The get_auroc is used to calculate marker values for each gene.

1	get_marker_genes(dataset, labels)

`dataset`	expression matrix
`labels`	cell labels corresponding clusters

data.frame containing the marker genes, corresponding cluster indexes and adjusted p-values

1 2	d <- get_marker_genes(yan[1:10,], as.numeric(ann [,1])) d

SC3 documentation built on Nov. 8, 2020, 7:52 p.m.

SC3 index

SC3 package manual

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description