get_outl_cells: Find cell outliers in each cluster.

Description Usage Arguments Value Examples

View source: R/ShinyFunctions.R

Description

Outlier cells in each cluster are detected using robust distances, calculated using the minimum covariance determinant (MCD), namely using covMcd. The outlier score shows how different a cell is from all other cells in the cluster and it is defined as the differences between the square root of the robust distance and the square root of the 99.99

Usage

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Arguments

dataset

expression matrix

labels

cell labels corresponding to the columns of the expression matrix

Value

a numeric vector containing the cell labels and correspoding outlier scores ordered by the labels

Examples

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d <- get_outl_cells(yan[1:10,], as.numeric(ann[,1]))
head(d)

SC3 documentation built on Jan. 5, 2019, 6:42 p.m.