sc3_kmeans: 'kmeans' clustering of cells.

In SC3: Single-Cell Consensus Clustering

Description

This function performs kmeans clustering of the matrices contained in the transformations item of the sc3 slot of the metadata(object). It then creates and populates the following items of the sc3 slot:

• kmeans - contains a list of kmeans clusterings.

Usage

sc3_kmeans.SingleCellExperiment(object, ks)

## S4 method for signature 'SingleCellExperiment'
sc3_kmeans(object, ks = NULL)

Arguments

object	an object of SingleCellExperiment class
ks	a continuous range of integers - the number of clusters k to be used for SC3 clustering. Can also be a single integer.

Value

an object of SingleCellExperiment class

SC3 documentation built on Nov. 8, 2020, 7:52 p.m.