Files in SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data

NAMESPACE
DESCRIPTION
README.md
NEWS
src/dVect.cpp
src/genBeta.cpp
src/R_SNPRelate.c
src/genPCA.h
src/ThreadPool.h
src/genEIGMIX.cpp
src/genHWE.cpp
src/genSlideWin.cpp
src/dVect.h
src/ThreadPool.cpp
src/genKING.cpp
src/dGenGWAS.h
src/Makevars
src/genIBD.cpp
src/Makevars.win
src/dGenGWAS.cpp
src/genLD.cpp
src/genPCA.cpp
src/ConvToGDS.cpp
src/SNPRelate.cpp
src/genIBS.cpp
src/genFst.cpp
inst/CITATION
inst/extdata/sequence.vcf
inst/extdata/hapmap_geno.gds
inst/extdata/plinkhapmap.bim.gz
inst/extdata/plinkhapmap.bed.gz
inst/extdata/plinkhapmap.fam.gz
inst/doc/SNPRelateTutorial.html
inst/doc/SNPRelateTutorial.Rmd inst/doc/SNPRelateTutorial.R inst/unitTests/test_Func.R inst/unitTests/test_rel.R inst/unitTests/test_examples.R inst/unitTests/test_LD.R inst/unitTests/test_Transpose.R
inst/unitTests/valid/Validate.IBS.RData
inst/unitTests/valid/Validate.MoM.RData
inst/unitTests/valid/Validate.KING.RData
inst/unitTests/valid/Validate.PCA.RData
inst/unitTests/valid/Validate.EIGMIX.RData
inst/unitTests/valid/Validate.Beta.RData
R/LD.R R/Conversion.R R/Conversion2.R R/AllUtilities.R R/IBD.R R/Internal.R R/IBS.R R/PCA.R
data/hapmap_geno.RData
man/snpgdsPCASNPLoading.Rd man/snpgdsExampleFileName.Rd man/snpgdsGEN2GDS.Rd man/snpgdsBED2GDS.Rd man/SNPRelate-package.Rd man/snpgdsSlidingWindow.Rd man/snpgdsIBDKING.Rd man/snpgdsSNPListIntersect.Rd man/snpgdsCutTree.Rd man/snpgdsIBDMLELogLik.Rd man/snpgdsSNPList.Rd man/snpgdsIBDSelection.Rd man/snpgdsPairIBDMLELogLik.Rd man/snpgdsOpen.Rd man/snpgdsIndivBeta.Rd man/snpgdsVCF2GDS.Rd man/snpgdsCreateGeno.Rd man/snpgdsGRM.Rd man/snpgdsAdmixProp.Rd man/snpgdsIBSNum.Rd man/snpgdsPairIBD.Rd man/snpgdsSNPListClass.Rd man/snpgdsIBDMoM.Rd man/snpgdsGDS2PED.Rd man/snpgdsPCACorr.Rd man/snpgdsLDpair.Rd man/snpgdsHWE.Rd man/snpgdsAdmixPlot.Rd man/snpgdsDiss.Rd man/snpgdsSelectSNP.Rd man/snpgdsDrawTree.Rd man/snpgdsLDpruning.Rd man/snpgdsSNPListStrand.Rd man/snpgdsHCluster.Rd man/snpgdsPairScore.Rd man/snpgdsGetGeno.Rd man/snpgdsSummary.Rd man/snpgdsFst.Rd man/snpgdsSampMissRate.Rd man/snpgdsVCF2GDS_R.Rd man/snpgdsErrMsg.Rd man/snpgdsCreateGenoSet.Rd man/snpgdsAlleleSwitch.Rd man/snpgdsIBDMLE.Rd man/snpgdsApartSelection.Rd man/snpgdsPCASampLoading.Rd man/snpgdsIndInb.Rd man/snpgdsTranspose.Rd man/snpgdsPCA.Rd man/snpgdsGDS2Eigen.Rd man/snpgdsCombineGeno.Rd man/snpgdsClose.Rd man/snpgdsPED2GDS.Rd man/snpgdsOption.Rd man/snpgdsEIGMIX.Rd man/snpgdsIndInbCoef.Rd man/snpgdsSNPRateFreq.Rd man/snpgdsGDS2BED.Rd man/hapmap_geno.Rd man/SNPGDSFileClass-class.Rd man/snpgdsIBS.Rd man/snpgdsLDMat.Rd vignettes/SNPRelateTutorial.Rmd
vignettes/link.png
vignettes/SNPRelate-Flowchart.png
build/vignette.rds
tests/runTests.R
SNPRelate documentation built on Nov. 17, 2017, 12:16 p.m.