SQUADD: Add-on of the SQUAD Software

This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.

Author
Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios
Date of publication
None
Maintainer
Martial Sankar <martial.sankar@unil.ch>
License
GPL (>=2)
Version
1.24.0
URLs

View on Bioconductor

Man pages

getFittedTable
Build the table of fitted values.
getFittedTable-methods
Build the table of fitted values
plotCC
Generate the Correlation Circle.
plotCC-methods
plot the correlation circle
plotPredMap
Prediction map
plotPredMap-methods
Display a prediction map
plotSimMatrix
Generate the SQUAD Simulation matrix display.
plotSimMatrix-methods
Generate a SQUAD simulation matrix
SQUADD-package
Collection of visualization tools to perform a SQUAD-based...
SquadSimResServiceImpl-class
Class "SquadSimResServiceImpl"

Files in this package

SQUADD/DESCRIPTION
SQUADD/NAMESPACE
SQUADD/R
SQUADD/R/SquadSimResService.R
SQUADD/R/SquadSimResServiceImpl.R
SQUADD/build
SQUADD/build/vignette.rds
SQUADD/inst
SQUADD/inst/doc
SQUADD/inst/doc/SQUADD.R
SQUADD/inst/doc/SQUADD.Rnw
SQUADD/inst/doc/SQUADD.pdf
SQUADD/inst/doc/SQUADD_ERK.R
SQUADD/inst/doc/SQUADD_ERK.Rnw
SQUADD/inst/doc/SQUADD_ERK.pdf
SQUADD/inst/extdata
SQUADD/inst/extdata/data_ERK
SQUADD/inst/extdata/data_ERK/1_ERK-sustained.txt
SQUADD/inst/extdata/data_ERK/2_mERK-sustained.txt
SQUADD/inst/extdata/data_ERK/3_gERK-sustained.txt
SQUADD/inst/extdata/data_ERK/sample.prt
SQUADD/inst/extdata/data_ERK/sample_model.net
SQUADD/inst/extdata/data_IAA
SQUADD/inst/extdata/data_IAA/brx_1_normal.txt
SQUADD/inst/extdata/data_IAA/brx_2_brxlof.txt
SQUADD/inst/extdata/data_IAA/brx_3_brrescue.txt
SQUADD/inst/extdata/data_IAA/brx_4_brxarfi.txt
SQUADD/inst/extdata/data_IAA/brx_5_brxarfiRescue.txt
SQUADD/inst/extdata/data_IAA/brx_6_gain.txt
SQUADD/man
SQUADD/man/SQUADD-package.Rd
SQUADD/man/SquadSimResServiceImpl-class.Rd
SQUADD/man/getFittedTable-methods.Rd
SQUADD/man/getFittedTable.Rd
SQUADD/man/plotCC-methods.Rd
SQUADD/man/plotCC.Rd
SQUADD/man/plotPredMap-methods.Rd
SQUADD/man/plotPredMap.Rd
SQUADD/man/plotSimMatrix-methods.Rd
SQUADD/man/plotSimMatrix.Rd
SQUADD/vignettes
SQUADD/vignettes/SQUADD.Rnw
SQUADD/vignettes/SQUADD_ERK.Rnw
SQUADD/vignettes/biblio.bib