plotCC: Generate the Correlation Circle.
In SQUADD: Add-on of the SQUAD Software

Description Usage Arguments Details Author(s) See Also Examples

This method generates the correlation circle. Correlation circle is used to assess the coherence of a model. Indeed, Each vector represents our conditions and the angle between each vector give the correlation between the variables. if the angle is higher than 90 degrees there is no correlation.

1	plotCC(object)

object

Object of the Class SquadSimResServiceImpl.

The percentage of variability explained by the two first principal components are displayed in parenthesis in the axis label.

Martial Sankar

More specific information in plotCC-methods. For more informations about the input object see SquadSimResServiceImpl-class.

fpath <- system.file("extdata", package="SQUADD")
fileModel <- file.path(fpath,"data_IAA")
nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1",
 "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis","BZR1",
  "DO", "IAA", "IAA_Biosynthesis", "NGA1", "PIN", "SCFTir1",
  "StimAux", "StimBR")
t <- 50

## call constructor
obj <- simResService(
		folder=fileModel,
		time=t,
		ncolor=5,
		legend=nm,
		indexDeno=1,
		method="lowess",
		conditionList=c("Normal", "brxlof", "BRrescue","brxarfilof", 
		             "brxarfiBRrescue", "brxgof")
)
## call method
plotCC(obj)