plotPredMap: Prediction map

In SQUADD: Add-on of the SQUAD Software

Description

This method is used to visualize the prediction heat-map. The prediction map is generated by mapping a color code on the ratio of the fitted values.

Usage

plotPredMap(object)

Arguments

object

object of the Class SquadSimResServiceImpl.

Details

This method firstly interpolate the SQUAD Simulation Result. Then, it performs a ratio at a user-defined time point. Finally, a color code is assigned to the ratio value. The darker the color, the higher the increase of the node activation.

Author(s)

Martial Sankar

See Also

More information about heatmap, heatmap More specific information in plotPredMap-methods. For more informations about the input object see SquadSimResServiceImpl-class.

Examples

fpath <- system.file("extdata", package="SQUADD")
fileModel <- file.path(fpath,"data_IAA")
nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1",
 "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis",  "BZR1", "DO",
  "IAA", "IAA_Biosynthesis",   "NGA1", "PIN", "SCFTir1","StimAux", "StimBR")
t <- 50

## call constructor
obj <- simResService(
		folder=fileModel,
		time=t,
		ncolor=5,
		legend=nm,
		indexDeno=1,
		method="lowess")

## Apply method 
plotPredMap(obj)

SQUADD documentation built on Nov. 8, 2020, 6:50 p.m.