plotSimMatrix: Generate the SQUAD Simulation matrix display.

In SQUADD: Add-on of the SQUAD Software

Description

This method is used to create a simulation matrix. Each columns correspond to the user-selected component node and the each rows, to the conditions.

Usage

plotSimMatrix(object)

Arguments

object

object of the Class SquadSimResServiceImpl.

Author(s)

Martial Sankar

See Also

More specific information in plotSimMatrix-methods. For more informations about the input object see SquadSimResServiceImpl-class.

Examples

fpath <- system.file("extdata", package="SQUADD")
fileModel <- file.path(fpath,"data_IAA")
nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1",
 "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis","BZR1",
  "DO", "IAA", "IAA_Biosynthesis", "NGA1", "PIN", "SCFTir1","StimAux", "StimBR")
t <- 50

## call constructor
obj <- simResService(
		folder=fileModel,
		time=t,
		ncolor=5,
		legend=nm,
		indexDeno=1,
		method="lowess",
		selectNode=c("DO","IAA_Biosynthesis","BR_Biosynthesis", "IAA", "BR"))

## call method
plotSimMatrix(obj)		
		
		
		

SQUADD documentation built on Nov. 8, 2020, 6:50 p.m.