SpidermiRanalyze_Community_detection_net: Find the network of community detection and direct biormarker
In SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
Description
Usage
Arguments
Value
Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_direct_net find the direct interactions from a specific community
Usage
1
SpidermiRanalyze_Community_detection_net(data, comm_det, size)
Arguments
data
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
comm_det
SpidermiRanalyze_Community_detection
size
the index of community detection obtained from SpidermiRanalyze_Community_detection
Value
dataframe with the interatcions
Examples
1
2
3
miRNA_cN <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
comm<- SpidermiRanalyze_Community_detection(data=miRNA_cN,type="FC")
cd_net<-SpidermiRanalyze_Community_detection_net(data=miRNA_cN,comm_det=comm,size=1)
SpidermiR documentation built on Nov. 8, 2020, 8:25 p.m.
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Description Usage Arguments Value Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_direct_net find the direct interactions from a specific community
Usage
1 | SpidermiRanalyze_Community_detection_net(data, comm_det, size)
|
Arguments
data |
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet |
comm_det |
SpidermiRanalyze_Community_detection |
size |
the index of community detection obtained from SpidermiRanalyze_Community_detection |
Value
dataframe with the interatcions
Examples
1 2 3 | miRNA_cN <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
comm<- SpidermiRanalyze_Community_detection(data=miRNA_cN,type="FC")
cd_net<-SpidermiRanalyze_Community_detection_net(data=miRNA_cN,comm_det=comm,size=1)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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