SpidermiRanalyze_subnetwork_neigh: Searching by biomarkers of interest and all the edges among...
In SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
Description
Usage
Arguments
Value
Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_subnetwork_neigh create a sub network composed by the nodes in BI and, if some of them are connected to other nodes (even if not in BI), take also them (include all the edges among this bunch of nodes).
Usage
1
Arguments
data
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
BI
a set of biomarkers of interest
Value
dataframe with interactions
Examples
1
2
3
miRNA_cN <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
GIdirect_net_neigh<-SpidermiRanalyze_subnetwork_neigh(data=miRNA_cN,BI=biomark_of_interest)
SpidermiR documentation built on Nov. 8, 2020, 8:25 p.m.
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Description Usage Arguments Value Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_subnetwork_neigh create a sub network composed by the nodes in BI and, if some of them are connected to other nodes (even if not in BI), take also them (include all the edges among this bunch of nodes).
Usage
1 |
Arguments
data |
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet |
BI |
a set of biomarkers of interest |
Value
dataframe with interactions
Examples
1 2 3 | miRNA_cN <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
GIdirect_net_neigh<-SpidermiRanalyze_subnetwork_neigh(data=miRNA_cN,BI=biomark_of_interest)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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