SpidermiRanalyze_direct_subnetwork: Searching by biomarkers of interest with direct interaction...

Description Usage Arguments Value Examples

View source: R/SpidermiRanalyze.R

Description

SpidermiRanalyze_direct_subnetwork creates a sub network composed by ONLY the nodes in genes of interest and the edges between them

Usage

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Arguments

data

SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet

BI

a set of biomarkers of interest

Value

dataframe with direct interaction of biomarkers of interest

Examples

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miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
subnet<-SpidermiRanalyze_direct_subnetwork(data=miRNA_cN,BI=biomark_of_interest)

SpidermiR documentation built on Nov. 8, 2020, 8:25 p.m.