SpidermiRanalyze_direct_subnetwork: Searching by biomarkers of interest with direct interaction...
In SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
Description
Usage
Arguments
Value
Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_direct_subnetwork creates a sub network composed by ONLY the nodes in genes of interest and the edges between them
Usage
1
Arguments
data
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
BI
a set of biomarkers of interest
Value
dataframe with direct interaction of biomarkers of interest
Examples
1
2
3
miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
subnet<-SpidermiRanalyze_direct_subnetwork(data=miRNA_cN,BI=biomark_of_interest)
SpidermiR documentation built on Nov. 8, 2020, 8:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/SpidermiRanalyze.R
Description
SpidermiRanalyze_direct_subnetwork creates a sub network composed by ONLY the nodes in genes of interest and the edges between them
Usage
1 |
Arguments
data |
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet |
BI |
a set of biomarkers of interest |
Value
dataframe with direct interaction of biomarkers of interest
Examples
1 2 3 | miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
subnet<-SpidermiRanalyze_direct_subnetwork(data=miRNA_cN,BI=biomark_of_interest)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.