Man pages for StarBioTrek
StarBioTrek
| average | For TCGA data get human pathway data and creates a matrix... |
| circleplot | Preparation for circle plot |
| ConvertedIDgenes | Get interacting genes inside pathways. |
| Data_CANCER_normUQ_fil | pathway data list |
| dsscorecrtlk | For TCGA data get human pathway data and creates a measure of... |
| eucdistcrtlk | For TCGA data get human pathway data and creates a measure of... |
| GE_matrix | Get human KEGG pathway data and a gene expression matrix in... |
| GE_matrix_mean | Get human KEGG pathway data and a gene expression matrix in... |
| GetData | Get general information inside pathways. |
| getNETdata | Get network data from GeneMania. |
| GetPathData | Get genes inside pathways. |
| GetPathNet | Get interacting genes inside pathways. |
| GOChord | Displays the relationship between genes and terms. |
| IPPI | Multilayer analysis Cava et al. BMC Genomics 2017 |
| listpathnet | Get human KEGG pathway data and the output of list_path_net... |
| netw | network data |
| netw_IPPI | network data for IPPI fucntion |
| norm | TCGA data with normal samples |
| path | pathway data list |
| path_KEGG | All pathways data from KEGG |
| pathnet | Get human KEGG pathway data and creates a network data. |
| pathway | pathway data |
| pathway_matrix | network data |
| plotcrosstalk | Preparation for plotting cross-talk |
| score_euc_dista | Score Matrix of pairwise pathway using euclidean distance |
| select_class | Select the class of TCGA data |
| SelectedSample | Select the class of TCGA data |
| StarBioTrek | Download data |
| stdv | For TCGA data get human pathway data and creates a measure of... |
| svm_classification | SVM classification for each feature |
| tumo | TCGA data with tumour samples |
