Files in TAPseq

Targeted scRNA-seq primer design for TAP-seq

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/chr11_primers.rda

data/bone_marrow_genex.rda

data/datalist

data/chr11_genes.rda

data/chr11_truncated_txs.rda

data/chr11_polyA_sites.rda

data/chr11_truncated_txs_seq.rda

R/transcript_model_utils.R R/get_txs_seq.R R/check_primers.R R/TsIO_classes.R R/polyA_from_dropseq.R

R/sysdata.rda

R/onLoad.R R/primer3_io.R R/blast_primers.R R/pick_primers.R R/tapseq_input.R R/select_target_genes.R R/truncate_txs_polyA_sites.R R/data.R R/TAPseq.R R/export_primers.R vignettes/tapseq_target_genes.Rmd vignettes/tapseq_primer_design.Rmd man/estimateOffTargets.Rd man/TsIOList-class.Rd man/getTxsSeq.Rd man/TsIO-class.Rd man/parsePrimer3Output.Rd man/checkPrimers.Rd man/TAPseq.Rd man/designPrimers.Rd man/chr11_truncated_txs.Rd man/pickPrimers.Rd man/chr11_primers.Rd man/exportPrimers.Rd man/truncateTxsPolyA.Rd man/createIORecord.Rd man/accessors.Rd man/check_tool_installation.Rd man/chr11_truncated_txs_seq.Rd man/TAPseqInput.Rd man/bone_marrow_genex.Rd man/selectTargetGenes.Rd man/chr11_polyA_sites.Rd man/inferPolyASites.Rd man/chr11_genes.Rd man/get_gt_sequences.Rd tests/testthat.R tests/testthat/test_TsIO_classes.R tests/testthat/test_polyA_from_dropseq.R tests/testthat/test_tapseq_input.R tests/testthat/test_export_primers.R tests/testthat/test_get_txs_seq.R tests/testthat/test_truncate_txs_polyA_sites.R tests/testthat/test_blast_primers.R tests/testthat/test_check_primers.R tests/testthat/test_primer3_io.R inst/doc/tapseq_target_genes.Rmd inst/doc/tapseq_target_genes.R

inst/doc/tapseq_target_genes.html

inst/doc/tapseq_primer_design.Rmd inst/doc/tapseq_primer_design.R

inst/doc/tapseq_primer_design.html

inst/extdata/chr11_k562_dropseq.bam

inst/extdata/chr11_k562_dropseq.bam.bai

TAPseq documentation built on Nov. 8, 2020, 7:51 p.m.