TAPseq: Targeted scRNA-seq primer design for TAP-seq

Design primers for targeted single-cell RNA-seq used by TAP-seq. Create sequence templates for target gene panels and design gene-specific primers using Primer3. Potential off-targets can be estimated with BLAST. Requires working installations of Primer3 and BLASTn.

Package details

AuthorAndreas Gschwind [aut, cre] (<https://orcid.org/0000-0002-0769-6907>), Lars Velten [aut] (<https://orcid.org/0000-0002-1233-5874>), Lars Steinmetz [aut]
Bioconductor views CRISPR PooledScreens Sequencing SingleCell Technology
MaintainerAndreas Gschwind <andreas.gschwind@stanford.edu>
LicenseMIT + file LICENSE
URL https://github.com/argschwind/TAPseq
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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TAPseq documentation built on Nov. 8, 2020, 7:51 p.m.