createIORecord: Create boulder IO record
In TAPseq: Targeted scRNA-seq primer design for TAP-seq

Description Usage Arguments Details Value Methods (by class) See Also Examples

Takes a TsIO or TsIOList object and converts it into a boulder IO record for Primer3. Essentially it converts it into a list of character vectors that each contain the tag and the value in the form: "TAG=VALUE". More on this format can be found in the Primer3 manual.

createIORecord(object, thermo_params_path = NA)

## S4 method for signature 'TsIO'
createIORecord(object, thermo_params_path = NA)

## S4 method for signature 'TsIOList'
createIORecord(object, thermo_params_path = NA)

`object`	TsIO of TsIOList object for which a Primer3 boulder IO record should be created.
`thermo_params_path`	Optional path (character) to the `primer3_config` directory. Only required when using Primer3 < 2.5.0.

This function is usually not needed by the user, because functions such as designPrimers handle IO record generation. However, this function can for instance be useful to generate IO records, write them to a file and pass them to Primer3 in the conventional way.

A character vector containing the lines of the IO record.

TsIO: Create IO record from TsIO objects.
TsIOList: Create IO record from TsIO objects.

http://primer3.org/manual.html for Primer3 manual.

# chromosome 11 truncated transcript sequences
data("chr11_truncated_txs_seq")

# create TsIOList object for primer desing from sequence templates
obj <- TAPseqInput(chr11_truncated_txs_seq, product_size_range = c(350, 500))

# create boulder IO record
boulder_io <- createIORecord(obj)
head(boulder_io, 11)