tpp2dExport: Produce Excel table of 2D-TPP experiment.

Description Usage Arguments Value Examples

View source: R/tpp2dExport.R

Description

Produce Excel table of 2D-TPP experiment analysis results.

Usage

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tpp2dExport(
  configTable = NULL,
  tab,
  resultPath = NULL,
  idVar = NULL,
  fcStr = NULL,
  intensityStr = NULL,
  outPath,
  addCol = NULL,
  normalizedData = NULL,
  trRef = NULL,
  addPlotColumns = TRUE
)

Arguments

configTable

DEPRECATED

tab

Table with results of the 2D-TPP analysis.

resultPath

DEPRECATED

idVar

DEPRECATED

fcStr

DEPRECATED

intensityStr

DEPRECATED

outPath

path for storing results table

addCol

additional names of columns which are to be attached to the result table

normalizedData

DEPRECATED

trRef

character string containing a valid system path to a TPP-TR reference RData file

addPlotColumns

boolean variable indicating whether paths to plot files should be generated and checked for validity. De-activate if no dose-response curve plots were produced during the analysis.

Value

Creates excel file of the TPP-CCR analysis of the 2D-TPP data.

Examples

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data(panobinostat_2DTPP_smallExample)
load(system.file("example_data/2D_example_data/shortData2d.RData", package="TPP"))
# tpp2dExport(configTable = panobinostat_2DTPP_config, tab=shortData2d, 
#             outPath=getwd(), 
#             idVar="representative", fcStr="norm_rel_fc_protein_", 
#             intensityStr="sumionarea_protein_", addCol=NULL)

data(panobinostat_2DTPP_smallExample)
# cfgRaw <- panobinostat_2DTPP_config
# datRaw <- panobinostat_2DTPP_data
# datIn <- tpp2dImport(cfgIn, datRaw, fcStr = NULL)
# datFC <- tpp2dComputeFoldChanges(data = datIn)
# datNorm <- tpp2dNormalize(data = datFC)
# cfgCCR <- convert_2D_cfgTable_to_CCR_cfgTable(cfgIn)
# datFitted <- tpp2dCurveFit(datNorm, nCores = 2)
# tpp2dCreateReport(getwd(), cfgIn, resultTable = datFitted, idVar = "representative", 
#                   intensityStr = "sumionarea_protein_")
# tpp2dExport(tab = datFitted, outPath = getwd(), addPlotColumns = FALSE) 

TPP documentation built on Nov. 8, 2020, 5:55 p.m.