TPP
Analyze thermal proteome profiling (TPP) experiments

Package index
Search the TPP package
Vignettes
Functions
255
Source code
233
Man pages
56
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TPP: Analyze thermal proteome profiling (TPP) experiments
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API

API for TPP
Analyze thermal proteome profiling (TPP) experiments

Global functions
.onLoad Man page Source code
AICc Source code
TPP Man page
TPP-defunct Man page
TPP-deprecated Man page
TPPTR_reference_results_HepG2 Man page
addTableToPlot Source code
analyze2DTPP Man page Source code
analyzeTPPCCR Man page Source code
analyzeTPPTR Man page Source code
applyCoeffs Source code
assignBins Source code
assignCompNumber_to_expName Source code
checkAndReturnDataSetting Source code
checkCPUs Source code
checkFunctionArgs Source code
checkIfLegendPossible Source code
checkResultCols_tppccr Source code
checkResultCols_tpptr Source code
check_if_data_is_eSet_list Source code
computeMPdiffs Source code
computeMinimalSlopes Source code
computeNormFactors Source code
computePvalues Source code
compute_spline_auc Source code
configTableListToLong Source code
convert_2D_cfgTable_to_CCR_cfgTable Source code
convert_2dData_wide_to_long Source code
convert_trData_wide_to_long Source code
createComparisonTable Source code
createValidPlotPaths Source code
create_spline_plots Source code
curveFitFctCCR_pEC50qualCheckCol Source code
detectLabelColumnsInConfigTable Source code
drCurveParamNames Source code
eSetsToLongTable_fData Source code
eSetsToLongTable_fc Source code
eval_spline_model Source code
exportFct_addPlotColumns Source code
exportFct_addPlotLinks_1DTPP Source code
exportFct_addPlotLinks_2DTPP Source code
exportFct_colorCodeColumns Source code
exportFct_convertBoolean_1DTPP Source code
exportFct_convertBoolean_2DTPP Source code
exportFct_ensureUniqueColumns Source code
exportFct_sortCols Source code
exportFct_trySave Source code
exprSubset Source code
extractConc Source code
extract_fit_factors Source code
fctSigmoidCCR Source code
fctSigmoidTR Source code
filterFCs Source code
filterOther Source code
filterTables Source code
findJointP Source code
fitDRCurve Source code
fitMeltCurves Source code
fitSigmoidCCR Source code
fitSigmoidTR Source code
fit_and_eval_spline_model Source code
fit_spline_model Source code
fit_splines_under_H0_and_H1 Source code
generateColors4Temps Source code
guessDRparamBoundaries Source code
guessInitialDRslope Source code
guessInitialpEC50 Source code
hdacCCR_config Man page
hdacCCR_data Man page
hdacCCR_smallExample Man page
hdacTR_config Man page
hdacTR_data Man page
hdacTR_resultsTable_smallExample Man page
hdacTR_smallExample Man page
helperFctPlotAll Source code
helperFctPlotGood Source code
helperFctPlotSingle Source code
import2DTR_main Source code
importAdditionalCols Source code
importCheckConfigTable Source code
importCheckExperimentNames Source code
importCheckTemperatures Source code
importFct_CheckDataFormat Source code
importFct_checkComparisons Source code
importFct_checkConditions Source code
importFct_checkExperimentCol Source code
importFct_createCCRInputFrom2DData Source code
importFct_create_fData Source code
importFct_create_pData Source code
importFct_df_to_eSet Source code
importFct_extractFCs Source code
importFct_fcCols Source code
importFct_makeOutputDirs Source code
importFct_makeUniqueIDs Source code
importFct_readConfigTable Source code
importFct_readFiles Source code
importFct_removeDuplicates Source code
importFct_replaceReplicateColumn Source code
importFct_reportValidValues Source code
importFct_rmZeroSias Source code
importTR_main Source code
importTR_tidy Source code
importTidyFoldChanges Source code
inferApparentStabilities Source code
inflectionPoint Source code
invoke_spline_prediction Source code
meltCurveParamNames Source code
meltingCurveSlope Source code
meltingPoint Source code
mergeOutputTables_CCR Source code
mergeOutputTables_TR Source code
merge_cols Source code
modelSelector Source code
mpSinglePval Source code
nonLabelColumns Source code
obtain_fcStr_from_df_annotation Source code
pValFctFilterModels Source code
pValFctPerformComparisons Source code
pValFctPerformSingleComparison Source code
pValFct_addMPdiff_and_MinSlope_Columns Source code
pValsCurrentBin Source code
panobinostat_2DTPP_config Man page
panobinostat_2DTPP_data Man page
panobinostat_2DTPP_smallExample Man page
paramsSigmoid Source code
plotColors Source code
plotColors_splineFits Source code
plotDRCurve Source code
plotIndividual Source code
plotLineTypes Source code
plotMeltingCurve Source code
plotNormCurves Source code
plot_2D_data_on_temperature_range Source code
plot_fSta_distribution Source code
plot_pVal_distribution Source code
predict_and_plot_spline_models Source code
predict_spline Source code
prepareForImport Source code
qcPlotFctVennTable Source code
qcPlotFct_Bottleplot Source code
qcPlotFct_CreateVenn Source code
qcPlotFct_MeltPointHist Source code
qcPlotFct_VennWrapper Source code
qcPlotFct_invokeBottleplots Source code
rSquared Source code
removeInvalidPaths Source code
replaceZeros Source code
resultTable Man page
retrieveDataFromESets_CCR Source code
retrieveDataFromESets_TR Source code
robustNlsPredict Source code
splitIDsIntoSeparateRows Source code
splitTidyMeasurementsForExport Source code
stopImplicitCluster Source code
storeDRCurveParams Source code
storeMeltCurveParams Source code
summarizeResultTable Source code
tidyUpReferenceObject Source code
tpp2dAddAdditionalInfo Man page Source code
tpp2dCalcFractAbundance Man page Source code
tpp2dComputeFoldChanges Man page Source code
tpp2dCreateCCRConfigFile Man page Source code
tpp2dCreateDRplots Man page Source code
tpp2dCreateReport Man page Source code
tpp2dCreateTPPTRreference Man page Source code
tpp2dCurveFit Man page Source code
tpp2dEvalConfigTable Man page Source code
tpp2dExport Man page Source code
tpp2dExportPlots Man page Source code
tpp2dImport Man page Source code
tpp2dMerge2dRef Man page Source code
tpp2dNormalize Man page Source code
tpp2dPlotCCRAllCurves Man page Source code
tpp2dPlotCCRGoodCurves Man page Source code
tpp2dPlotCCRSingleCurves Man page Source code
tpp2dPlotQChist Man page Source code
tpp2dPlotQCpEC50 Man page Source code
tpp2dRemoveZeroSias Man page Source code
tpp2dReplaceColNames Man page Source code
tpp2dSplineFitAndTest Man page Source code
tpp2dSplinePlot Man page Source code
tpp2dTRReferenceObject Man page Source code
tppDefaultTheme Man page Source code
tppExport Man page Source code
tppQCPlotsCorrelateExperiments Man page Source code
tppRefData Man page
tppccrCurveFit Man page Source code
tppccrImport Man page Source code
tppccrNormalize Man page Source code
tppccrNormalizeToReference Man page Source code
tppccrPlotCurves Man page Source code
tppccrResultTable Man page Source code
tppccrTransform Man page Source code
tpptrAnalyzeMeltingCurves Man page Source code
tpptrCurveFit Man page Source code
tpptrDefaultNormReqs Man page Source code
tpptrFTest Man page Source code
tpptrFitSplines Man page Source code
tpptrHelperFitandPlot Source code
tpptrImport Man page Source code
tpptrNormalize Man page Source code
tpptrPlotSplines Man page Source code
tpptrQCplots Source code
tpptrSplineAUCs Source code
tpptrSplineFitAndTest Man page Source code
tpptrTidyUpESets Man page Source code
writeTRRefOutputTable Source code
TPP documentation built on Nov. 8, 2020, 5:55 p.m.

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