API for TPP2D
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
| Global functions | |
|---|---|
| .TPP_checkFunctionArgs | Source code |
| .TPP_detectLabelColumnsInConfigTable | Source code |
| .TPP_importCheckTemperatures | Source code |
| .TPP_importFct_checkComparisons | Source code |
| .TPP_importFct_checkConditions | Source code |
| .TPP_importFct_checkExperimentCol | Source code |
| .TPP_importFct_readConfigTable | Source code |
| .TPP_importFct_removeDuplicates | Source code |
| .TPP_importFct_rmZeroSias | Source code |
| .TPP_nonLabelColumns | Source code |
| .TPP_replaceZeros | Source code |
| .checkDfColumns | Source code |
| .checkRatioRef | Source code |
| .detectOutliers | Source code |
| .evalH1Model | Source code |
| .evalH1SlopeEC50Model | Source code |
| .fitH0ParamDf | Source code |
| .fitH1ParamDf | Source code |
| .getFitDf | Source code |
| .getOptLimits | Source code |
| .getStartParameters | Source code |
| .medianNormalizeRatios | Source code |
| .min_RSS_h0 | Source code |
| .min_RSS_h0_gradient | Source code |
| .min_RSS_h0_gradient_trim | Source code |
| .min_RSS_h0_trim | Source code |
| .min_RSS_h1 | Source code |
| .min_RSS_h1_gradient | Source code |
| .min_RSS_h1_gradient_trim | Source code |
| .min_RSS_h1_slope50_gradient | Source code |
| .min_RSS_h1_slope_pEC50 | Source code |
| .min_RSS_h1_trim | Source code |
| .paste_rmNA | Source code |
| .removeAmbiguousMeasurements | Source code |
| .shrinkFstat | Source code |
| .trim_sum | Source code |
| TPP2D-defunct | Man page |
| TPP_importCheckConfigTable | Man page Source code |
| annotateDataList | Man page Source code |
| bootstrapNull | Man page Source code |
| bootstrapNullAlternativeModel | Man page Source code |
| competeModels | Man page |
| computeFStatFromParams | Man page |
| computeFdr | Man page Source code |
| computeFdr-defunct | Man page |
| computeFstat | Man page |
| configWide2Long | Man page Source code |
| config_tab | Man page |
| filterOutContaminants | Man page Source code |
| findHits | Man page Source code |
| fitAndEvalDataset | Man page |
| fitH0Model | Man page Source code |
| fitH1Model | Man page |
| getFDR | Man page Source code |
| getModelParamsDf | Man page Source code |
| getPEC504Temperature | Man page |
| getPvalues | Man page Source code |
| gg_qq | Man page Source code |
| import2dDataset | Man page Source code |
| import2dMain | Man page Source code |
| plot2dTppFcHeatmap | Man page Source code |
| plot2dTppFit | Man page Source code |
| plot2dTppProfile | Man page Source code |
| plot2dTppRelProfile | Man page Source code |
| plot2dTppVolcano | Man page Source code |
| raw_dat_list | Man page |
| recomputeSignalFromRatios | Man page Source code |
| renameColumns | Man page Source code |
| resolveAmbiguousProteinNames | Man page Source code |
| runTPP2D | Man page Source code |
| simulated_cell_extract_df | Man page |
| tpcaResult | Man page |
| tpp2dExperiment-class | Man page |
