config_tab: Example config table for a import of a simulated 2D-TPP cell...
In TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
Description
Config table fot import of simulated example
dataset obtained by 2D-TPP experiments for analysis by
the TPP2D-package. It's a data frame with the columns
"Compound" describing the compound used for the assay,
"Experiment" listing MS experiment ids of the separate runs
(typically comprising two multiplexed adjacent temperature),
"Temperature": the temperature used for a given sub-experimet,
the respective TMT labels "126"-"131L", RefCol referring to
the label used as a reference label for computing relative
fold changes (usually the label used for the control treatment).
Please note that when the data is not supplied as a list of
already imported data frames the config table for the import
function should be a path to an txt, csv or xlsx file containing
an additional column "Path" listing for each row the respective
path to a searched protein output file.
Usage
1
data("config_tab")
Format
"Compound" describing the compound used for the assay,
"Experiment" listing MS experiment ids of the separate runs
(typically comprising two multiplexed adjacent temperature),
"Temperature": the temperature used for a given sub-experimet,
the respective TMT labels "126"-"131L", RefCol referring to
the label used as a reference label for computing relative
fold changes (usually the label used for the control treatment).
TPP2D documentation built on Nov. 8, 2020, 4:54 p.m.
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Description
Config table fot import of simulated example dataset obtained by 2D-TPP experiments for analysis by the TPP2D-package. It's a data frame with the columns "Compound" describing the compound used for the assay, "Experiment" listing MS experiment ids of the separate runs (typically comprising two multiplexed adjacent temperature), "Temperature": the temperature used for a given sub-experimet, the respective TMT labels "126"-"131L", RefCol referring to the label used as a reference label for computing relative fold changes (usually the label used for the control treatment). Please note that when the data is not supplied as a list of already imported data frames the config table for the import function should be a path to an txt, csv or xlsx file containing an additional column "Path" listing for each row the respective path to a searched protein output file.
Usage
1 | data("config_tab")
|
Format
"Compound" describing the compound used for the assay, "Experiment" listing MS experiment ids of the separate runs (typically comprising two multiplexed adjacent temperature), "Temperature": the temperature used for a given sub-experimet, the respective TMT labels "126"-"131L", RefCol referring to the label used as a reference label for computing relative fold changes (usually the label used for the control treatment).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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